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Staff Profile

Dr Colin Gillespie

Senior Lecturer in Statistics

  • Telephone: +44 (0) 191 208 7248
  • Personal Website:
  • Address: School of Mathematics, Statistics and Physics
    Herschel Building
    缅北禁地
    缅北禁地 upon Tyne
    NE1 7RU
Background

Colin is the author of Efficient R Programming, published by O'Reilly Media and a DataCamp presenter. He has published over 80 peer-reviewed journal articles in applied and methodological statistics and successfully supervised 7 PhD students. His areas of expertise are high-performance statistical computing, bayesian statistics and stochastic kinetic modelling. Over the last few years, he has worked with numerous companies, including Shell, the NHS, MoD, and several Banks. He is also the CTO of . 




Research

Research Interests ()


  • Parallel computing;
  • Bayesian statistics;
  • Moment closure;
  • Stochastic kinetic models. 


Publications

  • Articles

    • Rajgor AD, Cowley J, Gillespie C, Lee CW, O'Hara J, Iqbal MS, Hamilton DW. . Journal of Laryngology and Otology 2024, 138(12), 1138-1154.
    • Rajgor AD, Kui C, McQueen A, Cowley J, Gillespie C, Mill A, Rushton S, Obara B, Bigirumurame T, Kallas K, O'Hara J, Aboagye E, Hamilton DW. . Journal of Laryngology and Otology 2023, 138(1), 685-691.
    • Prangle D, Harbisher S, Gillespie CS. . Bayesian Analysis 2023, 18(1), 133-163.
    • Fisher HF, Boys RJ, Gillespie CS, Proctor CJ, Golightly A. . Biometrics 2022, 78(3), 1195-1208.
    • Rajgor AD, Cowley J, Gillespie C, Lee CW, O'Hara J, Iqbal MS, Hamilton D. . Authorea 2022.
    • Smith LP, Moodie SL, Bergmann FT, Gillespie C, Keating SM, Konig M, Myers CJ, Swat MJ, Wilkinson DJ, Hucka M. . Journal of Integrative Bioinformatics 2020, 17(2-3), 20200018.
    • Gillespie CS, Golightly A. . Journal of Chemical Physics 2019, 150(22), 224103.
    • Matthews TJ, Borregaard MK, Gillespie CS, Rigal F, Ugland KI, Kruger RF, Marques R, Sadler JP, Borges PAV, Kubota Y, Whittaker RJ. . Methods in Ecology and Evolution 2019, 10(3), 432-437.
    • Gillespie CS, Boys RJ. . Statistics and Computing 2019, 29(4), 697-706.
    • Golightly A, Bradley E, Lowe T, Gillespie CS. . Computational Statistics and Data Analysis 2019, 136, 92-107.
    • Paish HL, Baldock TE, Gillespie CS, del Carpio Pons A, Mann DA, Deehan DJ, Borthwick LA, Kalson NS. . Journal of Orthopaedic Research 2019, 37(11), 2316-2324.
    • Albanna A, Sim M, Hoskisson PA, Gillespie C, Rao CV, Aldridge PD. Driving the expression of the Salmonella enterica sv Typhimurium flagellum using flhDC from Escherichia coli results in key regulatory and cellular differences. Scientific Reports 2018, 8(1), 16705.
    • James K, Chipeta C, Parker A, Harding S, Cockell SJ, Gillespie CS, Hallinan J, Barone F, Bowman SJ, Ng W-F, Fisher BA, for the UK Primary Sjögren's Syndrome Registry. . Rheumatology 2018, 57(7), 1222-1227.
    • Boys RJ, Ainsworth HF, Gillespie CS. . Australian and New Zealand Journal of Statistics 2018, 60(2), 157-173.
    • Andreasson ASI, Borthwick LA, Gillespie C, Jiwa K, Scott J, Henderson P, Mayes J, Romano R, Roman M, Ali S, Fildes JE, Marczin N, Dark JH, Fisher AJ, on behalf of the DEVELOP-UK Investigators. . Journal of Heart and Lung Transplantation 2017, 36(9), 985-995.
    • Andreasson ASI, Karamanou DM, Gillespie CS, Özalp F, Butt T, Hill P, Jiwa K, RWalden H, Green NJ, Borthwick LA, Clark SC, Pauli H, Gould KF, Corris PA, Ali S, Dark JH, Fisher AJ. . European Journal of Cardio-thoracic Surgery 2017, 51(3), 577-586.
    • Sim M, Koirala S, Picton D, Strahl H, Hoskissin PA, Rao CV, Gillespie CS, Aldridge PD. . Scientific Reports 2017, 7, 41189.
    • Gillespie CS. . Annals of Applied Statistics 2017, 11(4), 2357-2374.
    • Gillespie CS, Golightly A. . Statistical Applications in Genetics and Molecular Biology 2016, 15(5), 363–379.
    • Borthwick LA, Suwara MI, Carnell SC, Green NJ, Mahida R, Dixon D, Gillespie CS, Cartwright TN, Horabin J, Walker A, Olin E, Rangar M, Gardner A, Mann J, Corris PA, Mann DA, Fisher AJ. . American Journal of Transplantation 2016, 16(6), 1751-1765.
    • Owen J, Wilkinson DJ, Gillespie CS. . Statistics and Computing 2015, 25(1), 145-156.
    • Owen J, Wilkinson DJ, Gillespie CS. . Statistical Applications in Genetics and Molecular Biology 2015, 14(2), 189–209.
    • Gillespie CS. . Journal of Statistical Software 2015, 64(2).
    • James K, Al-Ali S, Tarn J, Cockell SJ, Gillespie CS, Hindmarsh V, Locke J, Mitchell S, Lendrem D, Bowman S, Price E, Pease CT, Emery P, Lanyon P, Hunter JA, Gupta M, Bombardieri M, Sutcliffe N, Pitzalis C, McLaren J, Cooper A, Regan M, Giles I, Isenberg D, Saravanan V, Coady D, Dasgupta B, McHugh N, Young-Min S, Moots R, Gendi N, Akil M, Griffiths B, The UK Primary Sjögren’s Syndrome registry, Wipat A, Newton J, Jones DE, Isaacs J, Hallinan J, Ng W-F. . PLoS ONE 2015, 10(12), e0143970.
    • Sherlock C, Golightly A, Gillespie CS. . Inverse Problems 2014, 30(11), 114005.
    • Milner P, Gillespie CS, Wilkinson DJ. . Statistics and Computing 2013, 23(2), 287-295.
    • Gillespie CS. . Journal of Chemical Physics 2012, 136(1), 014101.
    • Bell MJ, Gillespie CS, Swan D, Lord P. . Bioinformatics 2012, 28(18), i562-i568.
    • Lawless C, Jurk D, Gillespie CS, Shanley D, Saretzki G, von Zglinicki T, Passos JF. . PLoS One 2012, 7(2), e32117.
    • Wockenforth R, Gillespie CS, Jaffray B. . British Journal of Surgery 2011, 98(5), 680-685.
    • Caldwell GS, Fitzer S, Gillespie CS, Pickavance G, Turnbull E, Bentley MG. . Invertebrate Reproduction and Development 2011, 55(4), 217-221.
    • Milner P, Gillespie CS, Wilkinson DJ. . Mathematical Biosciences 2011, 231(2), 99-104.
    • Pohl S, Tu WY, Aldridge PD, Gillespie C, Hahne H, Mäder U, Read TD, Harwood CR. . Proteomics 2011, 11(15), 3036-3055.
    • Lei G, Boys RJ, Gillespie CS, Greenall AJ, Wilkinson DJ. . Journal of Biometrics and Biostatistics 2011, 2(127).
    • Chen YH, Lawless C, Gillespie CS, Wu J, Boys RJ, Wilkinson DJ. . Briefings in Bioinformatics 2010, 11(3), 278-289.
    • Gillespie CS, Golightly A. . Journal of the Royal Statistical Society: Series C (Applied Statistics) 2010, 59(2), 341-357.
    • Gillespie CS, Lei G, Boys RJ, Greenall AJ, Wilkinson DJ. . BMC Research Notes 2010, 3(81).
    • Hong M, Ryan KR, Arkwright P, Gennery A, Costigan C, Denning D, Cant AJ, Abinun M, Young DA, McConnell V, Spickett GP, Swan DC, Gillespie CS, Lilac D, Dominguez M. . Clinical and Experimental Immunology 2009, 156(1), 40-51.
    • Gillespie CS. . IET Systems Biology 2009, 3(1), 52-58.
    • Evans TW, Gillespie CS, Wilkinson DJ. . Bioinformatics 2008, 24(2), 285-286.
    • Gillespie CS, Renshaw E. . Journal of Physics A: Mathematical and Theoretical 2008, 41(35), -.
    • Lawson SEM, Gillespie C. . Journal of Biomechanics 2007, 40(s2), S321.
    • Proctor CJ, Lydall D, Boys RJ, Gillespie CS, Shanley D, Wilkinson DJ, Kirkwood TBL. . Journal of the Royal Society Interface 2007, 4(12), 73-90.
    • Gillespie CS, Renshaw E. . Mathematical Biosciences 2007, 208(2), 359-374.
    • Gillespie C, Wilkinson D, Proctor CJ, Shanley D, Boys RJ, Kirkwood TBL. . Bioinformatics 2006, 22(5), 628-629.
    • Gillespie CS, Wilkinson DJ, Shanley DP, Proctor CJ, Boys RJ, Kirkwood TBL. . Journal of Integrative Bioinformatics 2006, 3(2), [12].
    • Gillespie CS, Renshaw E. . Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences 2005, 461(2057), 1563-1581.
    • Proctor CJ, Soti C, Boys RJ, Gillespie CS, Shanley DP, Wilkinson DJ, Kirkwood TBL. . Mechanisms of Ageing and Development 2005, 126(1), 119-131.
    • Gillespie C, Proctor CJ, Boys R, Shanley D, Wilkinson D, Kirkwood T. . Journal of Theoretical Biology 2004, 229(2), 189-196.

  • Book Chapters

    • Cockell S, Bashton M, Gillespie CS. . In: Rueda, L, ed. Microarray Image and Data Analysis: Theory and Practice. Boca Raton: CRC Press, 2014.
    • Golighty A, Gillespie CS. . In: Schneider, M.V, ed. In-silico Systems Biology: A systems-based approach to understanding biological processes. Humana Press, 2013, pp.169-187.
    • Kirkwood TBL, Boys RJ, Gillespie CS, Proctor CJ, Shanley DP, Wilkinson DJ. . In: Masoro, E.J., Austad, S.N, ed. Handbook of The Biology of Aging. London, UK: Academic Press, 2006, pp.334-356.
    • Kirkwood TBL, Boys RJ, Gillespie CS, Proctor CJ, Shanley DP, Wilkinson DJ. . In: Austad, S.N., Masoro, E.J, ed. Handbook of the Biology of Aging. Amsterdam; Boston: Academic Press, 2005, pp.334-359.

  • Conference Proceedings (inc. Abstracts)

    • Andreasson A, Karamanou D, Gillespie C, Borthwick L, Jiwa K, Henderson P, Ozalp F, Butt T, Clark SC, Pauli H, Corris PA, Ali S, Dark JH, Fisher AJ. . In: International Society for Heart and Lung Transplantation 36th Annual Meeting and Scientific Sessions. 2016, Washington, DC: Elsevier.
    • Howard-Tripp N, Tarn J, Gillespie C, Lendrem D, Griffiths B, Bowman S, Ng WF, United Kingdom Primary Sjögren's Syndrome Registry. . In: Rheumatology 2016. 2016, Glasgow: Oxford University Press.
    • James K, Cockell SJ, Gillespie CS, Assi LK, Bowman S, Griffiths B, Ng WF, UKPSSR. . In: The 13th International Symposium on Sjögren's Syndrome. 2015, Bergen, Norway: Wiley-Blackwell.
    • Tarn J, Lendrem D, Gillespie C, Al-Ali S, Griffiths B, Bowman S, Ng WF, Uk Primary Sjogren's Syndrome Regi. . In: 13th International Symposium on Sjögren's Syndrome. 2015, Bergen, Norway: Wiley-Blackwell Publishing Ltd.
    • James K, Al-Ali S, Tarn J, Cockell SJ, Gillespie CS, Bowman S, Isaacs J, Jones DE, Newton J, Price E, Wipat A, Hallinan J, Ng WF, UKPSSR. . In: The 13th International Symposium on Sjögren's Syndrome. 2015, Bergen, Norway: Wiley-Blackwell.
    • James K, Al-Ali S, Tarn J, Cockell SJ, Gillespie CS, Bowman S, Isaacs J, Jones DE, Newton J, Price E, Wipat A, Hallinan J, Ng WF, UKPSSR. . In: The 13th International Symposium on Sjögren's Syndrome. 2015, Bergen, Norway: Wiley-Blackwell.
    • James K, Cockell SJ, Gillespie CS, Assi L, Bowman S, Griffiths B, Ng WF, UKPSSR. . In: Annual European Congress of Rheumatology. 2014, Paris, France: BMJ Group.
    • Gillespie CS, Golightly A. . In: 9th International Workshop on Computational Systems Biology (WCSB). 2012, Ulm, Germany.
    • Gillespie CS, Proctor CJ, Shanley DP, Wilkinson DJ, Boys RJ, Kirkwood TBL. . In: UK e-Science All Hands Meeting. 2005, Nottingham, UK.

  • Editorial

    • Dall'Olio GM, Marino J, Schubert M, Keys KL, Stefan MI, Gillespie CS, Poulain P, Shameer K, Sugar R, Invergo BM, Jensen LJ, Bertranpetit J, Laayouni H. . PLoS Computational Biology 2011, 7(9), e1002202.

  • Report

    • Bell MJ, Gillespie CS, Swan D, Lord P. . 缅北禁地 upon Tyne: School of Computing Science, University of 缅北禁地 upon Tyne, 2012. School of Computing Science Technical Report Series 1336.

  • Reviews

    • Keating SM, Waltemath D, Konig M, Zhang F, Drager A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik-Sheriff RS, Moodie SL, Moraru II, Myers CJ, Naldi A, Olivier BG, Sahle S, Schaff JC, Smith LP, Swat MJ, Thieffry D, Watanabe L, Wilkinson DJ, Blinov ML, Begley K, Faeder JR, Gomez HF, Hamm TM, Inagaki Y, Liebermeister W, Lister AL, Lucio D, Mjolsness E, Proctor CJ, Raman K, Rodriguez N, Shaffer CA, Shapiro BE, Stelling J, Swainston N, Tanimura N, Wagner J, Meier-Schellersheim M, Sauro HM, Palsson B, Bolouri H, Kitano H, Funahashi A, Hermjakob H, Doyle JC, Hucka M, Adams RR, Allen NA, Angermann BR, Antoniotti M, Bader GD, Cerveny J, Courtot M, Cox CD, Dalle Pezze P, Demir E, Denney WS, Dharuri H, Dorier J, Drasdo D, Ebrahim A, Eichner J, Elf J, Endler L, Evelo CT, Flamm C, Fleming RMT, Frohlich M, Glont M, Goncalves E, Golebiewski M, Grabski H, Gutteridge A, Hachmeister D, Harris LA, Heavner BD, Henkel R, Hlavacek WS, Hu B, Hyduke DR, de Jong H, Juty N, Karp PD, Karr JR, Kell DB, Keller R, Kiselev I, Klamt S, Klipp E, Knupfer C, Kolpakov F, Krause F, Kutmon M, Laibe C, Lawless C, Li L, Loew LM, Machne R, Matsuoka Y, Mendes P, Mi H, Mittag F, Monteiro PT, Natarajan KN, Nielsen PMF, Nguyen T, Palmisano A, Pettit J-B, Pfau T, Phair RD, Radivoyevitch T, Rohwer JM, Ruebenacker OA, Saez-Rodriguez J, Scharm M, Schmidt H, Schreiber F, Schubert M, Schulte R, Sealfon SC, Smallbone K, Soliman S, Stefan MI, Sullivan DP, Takahashi K, Teusink B, Tolnay D, Vazirabad I, von Kamp A, Wittig U, Wrzodek C, Wrzodek F, Xenarios I, Zhukova A, Zucker J. . Molecular Systems Biology 2020, 16(8), e9110.
    • Kirkwood TBL, Boys RJ, Gillespie CJ, Proctor CJ, Shanley DP, Wilkinson DJ. . Nature Reviews Molecular Cell Biology 2003, 4(3), 243-249.